rs49465250 SNP Detail

Summary

• ID
  rs49465250
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64207100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCC TGGCTGTACT GCAGCATGCT
  G
  GTCCCGTGAG CTCGCTGTGA AAGAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149158453	ENSMUSSNP4204030	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324378688	CHEV_13_64160594	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49465250					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64207100 () rs orientation: forward

Symbol	Name	Function Class
Hsd17b3	hydroxysteroid (17-beta) dehydrogenase 3	within coordinates
Rr273309	regulatory region 273309	1500 bp distal
Tssr122993	transcription start site region 122993	525 bp downstream