rs49465271 SNP Detail

Summary

• ID
  rs49465271
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104703981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTTTAAT CTGAATCAGT
  GTTGAGCCAC CCCTCAAGAA CAGTTAAACT ACGTAGGAGG CTTGGGGCAA TATCATGTGA
  CAGGTGTTAT CACGTAACAG GAGGGGTTGG TAAAGGGAGT TTGGACTTTA ACCTTAGGCA
  GAGGCCACAC ACCTGATTAA GGCAGTATGC GTTAACTGGC AGCCTGCCAG GTTCCACCTC
  M
  GAACCACCTG GGGGAAACCC CAGTTCCACT TTGAGTAAAC AGGGTGGGAC AGGACATAGC
  ACAGGCCTAG ATAAGGGGAG TATGATCGAG AGTTAGGTTA CCTTCAAATC TTTGATGTCA
  TCCAGTCCGC GAAGTTCTCG GTCAAGTTTT GTGATGCAGT AACGGATTTT TTCTACCTGG
  AGGGAGGAAT AGGTGCCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss60431829	NES15936276	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs49465271					SNP	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431829	NES15936276	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104703981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mov10	Mov10 RISC complex RNA helicase			Intron
				Noncoding-Transcript-Variant
Rr582617	regulatory region 582617			1614 bp distal
Tssr31063	transcription start site region 31063			758 bp downstream