rs49465919 SNP Detail

Summary

• ID
  rs49465919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38406793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACGACAT GCGCTGGTCG
  TGTGAGCACC TCATTATGGT GTGGATCAAT GCTTTTGTCA TGCTCACCAC GCAACTGCTG
  CCATCCAAAT ACTGTGACTT GCTACACAAA TCAGCTGCTC ACCTGGGCAA GTGGCAGAAG
  TTGGAGCATG GGTTCTACAG CAATGCTCCA CAGCACATGT GAGTAGGGTA AAGGCTAAAC
  Y
  ATGTAGCACT TCTCTTCACG AGGCTAGTCA TGTCTATGCT GTGTGCCATT CTCGTTCTTG
  GTTTCTGTTT ACGTGGGTGT TTGTCATAGT ACTAAAAACA AGGCAGGACA TTAACTCATT
  TCCACCCCCA TCACCAGCTC CTTCTCCAGT GGGTCCATGT TTCAGCCGCC CAGTTACATT
  AGAGGCCATT ATACTCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss63757366	NES17089747	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49465919					SNP	T	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63757366	NES17089747	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38406793 () rs orientation: forward

Symbol	Name	Function Class
Tmem39a	transmembrane protein 39a	within coordinates
Tssr138403	transcription start site region 138403	1056 bp downstream
Tssr138404	transcription start site region 138404	1040 bp downstream