rs49466932 SNP Detail

Summary

• ID
  rs49466932
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80636414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGTCCTTA AGTGGCTGAG TATGAAACAT CCGACAAGCT
  GGTTCTGCCC CACCACTTCC ATATACATCT TTCAGCCATT CTCTCGGCAT CTAGAGCATC
  Y
  TGTATCCTTT GCATTCTAGC CTCTTTCTCT TTGACAGCCA GTGGTATCAG TGTCCTGTCT
  GTCCCAGACA CACTCTGTGG TGACACTGAG GTAACTAGGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ
ss61290499	NES16901599	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ
rs49466932					SNP	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290499	NES16901599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80636414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	1043 bp distal
Rr435394	regulatory region 435394	1965 bp distal
Rr435395	regulatory region 435395	1838 bp distal
Rr435396	regulatory region 435396	1089 bp distal
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94608	transcription start site region 94608	1964 bp downstream
Tssr94609	transcription start site region 94609	1938 bp downstream
Tssr94610	transcription start site region 94610	1823 bp downstream
Tssr94611	transcription start site region 94611	1628 bp downstream
Tssr94612	transcription start site region 94612	1818 bp upstream
Tssr98514	transcription start site region 98514	1682 bp upstream