rs49467426 SNP Detail

Summary

• ID
  rs49467426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79312431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATTTGCT CAGCTAACAG
  TTGACTAATT TTCTGCCTCT CAACAGATTG TACTATGCTT GCCTTGGGGC CTGCTCACAA
  TTACATACGT CATGCTCACC CAGTTCTTAT GACTCATTTT AACAAGTGTG AAAACTGTTA
  AATAAATTCT TGAATTTTTC TTTTTACTGT TTAAGGATTT TTTTTATTAT AGCAAGAATT
  Y
  TATAATACAA ATTATGTTTC TTTGCTCAAT CATAAGTTCT GCTTCTTAGA ACAGAGCTGA
  CTCCCCAAGC TATTCCACAG TAAAGAATTA CAACGTTAAA GAAAGGAATG CTTGAATATT
  CTAGCAGAGT GAAAGATCAC AAGGTAATGG ACCGATTGGA TCTTTTGATT TAAATCTAGC
  TCACCTTCTC CCGGGGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144772733	ENSMUSSNP3850702	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49467426					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79312431 () rs orientation: forward

Symbol	Name	Function Class
Gm70347	predicted gene, 70347	within coordinates
Rr413811	regulatory region 413811	872 bp proximal
Tssr129	transcription start site region 129	315 bp upstream