rs49467552 SNP Detail

Summary

• ID
  rs49467552
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5772995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTCCCC CCTCTATTAT
  AAAGCGTGTC CACCATTAAA AATTTGAGCC TTGATCAGAA TTCTGTCTTG GTTCCATCTC
  TCTCTCGTCG CCTAGTTTCC CTCTTCTTTT TCAGCTCCAG GCTGCCTCCC AGGCTCGAAC
  CCGGACATGA GAGCTGCAGG CCAGCCCCAA CACTTCAGGA AAAGAAAGAA GCTAAACCCC
  W
  CCCCAGGTCA TGTCTACCTT CCTGCCAACT ACCATTCTCA CTCCACTGCA ACTTTCCTGG
  TTGAATTTCT CTTCATCAAT AAGACTTTCG AAAAGCAAAA TAGAGAGATG CTCAAATGGA
  GGTAAATGAT TATTGATGTC CTTTCAATTT TTTAAATGAG GAATTAATTT TGAGAAATGT
  TTGCTTTCTG AGCACCCCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324223055	CHEV_13_5722242	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49467552					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5772995 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Rr387902	regulatory region 387902	855 bp upstream
Rr474521	regulatory region 474521	492 bp proximal
Rr474522	regulatory region 474522	1426 bp proximal
Tssr121308	transcription start site region 121308	1443 bp downstream