rs49468154 SNP Detail

Summary

• ID
  rs49468154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79660560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGAGAC TGAAGAAACA
  AAAGTGAAAG GAAATGCGAG TGTCTGGGAA GGAGCTGCGG GAAATGTTGA GTTCCAGATA
  ACAAGTCAGT GTGTCATCTA TGGCTCTGAG CCCCGCCTAG GACCAGGGAC AAGGTCCAAG
  GCACTCCCAG CTCTTGGCTT TATGGAGCTG AGGCAGGTGC TGTTGAGATG GGGCCAGGTG
  Y
  TGTCTGAAGC AGAGAACCAA GGTGTGAGAA CTGGGAGACA AGCTTTGCTA CACGTTCTGA
  GCCTCAGTTT CCCCACTCGG CATCATCCAT TGCCAAGAAC CAGAGCCCAA TGACTGTCTG
  TGAAGGTCAG GTGCAAAGAC CTGGGAGTTA GTGTGAGGAA CAGGGCTGTG CCCTGGAGAG
  GGGGAAGGGC CCTGGTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386549	NES15268647	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49468154					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386549	NES15268647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79660560 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Rr216663	regulatory region 216663	1241 bp proximal
Rr225117	regulatory region 225117	159 bp distal
Tssr94404	transcription start site region 94404	108 bp downstream
Tssr94405	transcription start site region 94405	31 bp downstream
Tssr94406	transcription start site region 94406	6 bp downstream
Tssr94407	transcription start site region 94407	1280 bp upstream
Tssr94408	transcription start site region 94408	1392 bp upstream
Tssr94409	transcription start site region 94409	1588 bp upstream