rs49469065 SNP Detail

Summary

• ID
  rs49469065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45174964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGA CATCACTGGG ATTGGCATAA
  Y
  CACAAAGTAT TAAGATTTTA CTGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61388322	NES16764957	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T	T		T	C	C		C
ss322942717	CHEV_9_45071749	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49469065					SNP	T	C	T	C	T	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388322	NES16764957	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45174964 () rs orientation: forward

Symbol	Name	Function Class
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	1867 bp distal
Tssr84758	transcription start site region 84758	1216 bp upstream
Tssr89253	transcription start site region 89253	727 bp upstream
Tssr89254	transcription start site region 89254	658 bp upstream
Tssr89255	transcription start site region 89255	598 bp upstream
Tssr89256	transcription start site region 89256	567 bp upstream
Tssr89257	transcription start site region 89257	510 bp downstream
Tssr89258	transcription start site region 89258	551 bp downstream
Tssr89259	transcription start site region 89259	574 bp downstream