rs49469239 SNP Detail

Summary

• ID
  rs49469239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167226067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGACTTGCT TCATTTTCTA GTACAACCCA GGCTCTTCAG
  CTTGGTCTGT TTTCTGTAGT CACAGCTCCT AGTAGCCAAC CGTCATCCAA CGATATCAGA
  Y
  GGAAAATCCC GGAAATAAAC AGTTCTTGAG CTTAATTTAG TTTGTGACCA AGTCTCTAAC
  TACACCGTCC TACCTTGCTG GGAATTCACT GTATAGACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148262626	ENSMUSSNP5295969	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49469239					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167226067 () rs orientation: forward

Symbol	Name	Function Class
Rr397506	regulatory region 397506	130 bp downstream
Rr570569	regulatory region 570569	within coordinates
Tssr21804	transcription start site region 21804	74 bp downstream
Tssr21805	transcription start site region 21805	51 bp downstream
Tssr27773	transcription start site region 27773	575 bp upstream