rs49470246 SNP Detail

Summary

• ID
  rs49470246
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34613519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAAAAAA AAATCACAAC TACAAAGTGT CAACGTGCAC
  TTGTGGGGGA AAGGAAGCCA GGAGCACTCT GGGTTAGCAT CCGGGCTCTA CTGCACCTTA
  C
  AAACACCAAA GATGCATTCG ATTTAAGAGG CAGGGAAAGC CTGTGCACCG CGATCCCGGG
  AGCGGATGCA GAGCCCGGGT TTGGGAGACG GGCGCGTTC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149094951	ENSMUSSNP3467996	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322575457	CHEV_8_35209419	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49470246					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34613519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	within coordinates
Leprotl1	leptin receptor overlapping transcript-like 1	within coordinates
Rr661962	regulatory region 661962	1001 bp distal
Rr661963	regulatory region 661963	within coordinates
Rr661964	regulatory region 661964	658 bp proximal
Tssr76861	transcription start site region 76861	1116 bp downstream
Tssr76862	transcription start site region 76862	28 bp downstream
Tssr76863	transcription start site region 76863	within coordinates
Tssr76864	transcription start site region 76864	10 bp upstream
Tssr80896	transcription start site region 80896	204 bp upstream
Tssr80897	transcription start site region 80897	216 bp downstream
Tssr80898	transcription start site region 80898	352 bp downstream
Tssr80899	transcription start site region 80899	367 bp downstream
Tssr80900	transcription start site region 80900	388 bp downstream
Tssr80901	transcription start site region 80901	409 bp downstream
Tssr80902	transcription start site region 80902	609 bp downstream
Tssr80903	transcription start site region 80903	653 bp downstream