rs49470947 SNP Detail

Summary

• ID
  rs49470947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76846709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAAGAGC CCAAAGAGAC
  TAGAGAGGAG CACCAGACCC CCTGGAATTG GAGTTACAGA TGCTTGTACC CAGCCATGTG
  GATGCTGGGA TTTGAACCCT GGTCATCCGC AATAGCCAGT GCTCTTAACC GCTGAGTCAT
  CTCTCTGGCT CCTTCCCCAC CCTGATCTTT AACTTGTAAA GTAACTGAAC CTGTTATTTT
  Y
  CCACTCCAGG GCAAGTGGTC AGTTACTCCT TTTCCTTGCT CCAGACAGCA TGTTCTGTTT
  ATTTTTATTT TTTTGTCCTT GACTACATAT TTTTTTATTT TTTTTAGGCA GAGCTGGGCT
  TGAACCCAGG TTTTCTGTAT GTTGGGCAGG CTGTACCAGC ACAGTACATC CCCAGCCCTG
  TCAGTGTTGT TTTGTTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376423	NES15271976	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49470947					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376423	NES15271976	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76846709 () rs orientation: forward

Symbol	Name	Function Class
Gm3137	predicted gene, 3137	626 bp downstream
Gm10787	predicted gene 10787	1120 bp upstream
Rr434364	regulatory region 434364	1981 bp distal
Rr434365	regulatory region 434365	1424 bp proximal
Tssr94202	transcription start site region 94202	1109 bp upstream