rs49471997 SNP Detail

Summary

• ID
  rs49471997
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83173667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTTCTGC CCCCCGCCCT GTCCCCTTTC AACATGTGCT
  TAACATTTTC ACTCCAGAGA ACAGTCTCCT AGCCCCACAG CTAAACCACC AGGGCTCTGG
  W
  CGTTCCTCAT CTCACCTGAG GACTTGCCCT TATCAGAGGC CTTGTCATAG ATTCGACTTG
  ATTCAGGACG GCGACCAAGT GCCTGTGTGA CAGTGTACTC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60903728	NES15949700	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49471997					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60903728	NES15949700	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83173667 () rs orientation: forward

Symbol	Name	Function Class
Dctn1	dynactin 1	within coordinates
Tssr57329	transcription start site region 57329	860 bp downstream
Tssr57330	transcription start site region 57330	836 bp downstream
Tssr57331	transcription start site region 57331	804 bp downstream
Tssr57332	transcription start site region 57332	728 bp downstream
Tssr57333	transcription start site region 57333	708 bp downstream
Tssr57334	transcription start site region 57334	669 bp downstream
Tssr57335	transcription start site region 57335	651 bp downstream