rs49472272 SNP Detail

Summary

• ID
  rs49472272
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121304484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACGC CGCGTCCCAC AGGCTGTGCT
  S
  GACACAGCTG CGCAACTGAC AGAAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147387252	ENSMUSSNP1975337	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320483278	CHEV_2_121299739	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49472272					SNP	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121304484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12161	CpG island 12161	within coordinates
Gm75774	predicted gene, 75774	86 bp upstream
Mfap1b	microfibrillar-associated protein 1B	mRNA-UTR
Rr563831	regulatory region 563831	918 bp distal
Rr563832	regulatory region 563832	790 bp distal
Rr563833	regulatory region 563833	54 bp proximal
Rr563834	regulatory region 563834	97 bp proximal
Tssr25938	transcription start site region 25938	within coordinates
Tssr25939	transcription start site region 25939	38 bp downstream