rs49472325 SNP Detail

Summary

• ID
  rs49472325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13427310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CCTGTCTCTG CTTCCGAGTG CTGGGATTAA GAGTGTGTGC
  CACCACACCC AGTTTTTTCC TTCCTCTTCA TCTCCAAATA TAAAACTCTC AATATCGTTT
  Y
  AAAAAAAACC TATTACTATA TGCATATACT CTTTAATTTC TCCTATGATT ATTTCTGATC
  TGCCATTAAG TATTTCATAA ACTGTAAGGG TTAGGCTTTT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146822642	ENSMUSSNP6872698	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49472325					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13427310 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	1341 bp upstream
Cpgi1315	CpG island 1315	1285 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	1373 bp upstream
Rr427802	regulatory region 427802	1001 bp proximal
Rr427803	regulatory region 427803	1262 bp proximal
Rr427804	regulatory region 427804	1339 bp proximal
Rr427805	regulatory region 427805	1544 bp proximal
Tssr92399	transcription start site region 92399	1621 bp upstream
Tssr92400	transcription start site region 92400	1679 bp upstream
Tssr96771	transcription start site region 96771	1289 bp downstream
Tssr96772	transcription start site region 96772	1433 bp downstream
Tssr96773	transcription start site region 96773	1497 bp downstream
Tssr96774	transcription start site region 96774	1545 bp downstream
Tssr96775	transcription start site region 96775	1574 bp downstream
Tssr96776	transcription start site region 96776	1589 bp downstream