rs49472617 SNP Detail

Summary

• ID
  rs49472617
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129204960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGACATA CAAAAATGGA TGACAGATGT ATGAAAACAT
  ATTCAACACT AATCACACTA ATCACAAACT GTTACTTTTC AAGGTCTCTA CAAAATACAA
  G
  CAGTAACTTG TAGCTTAAGG GAGGTGATAG ACAACAAGCT TGATCTTGAG TGGTATCATA
  ATTGACTACA CAGGCATTTT CATCATCTGT TAAGCAATA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss133654265	ENSMUSSNP6331615	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321948745	CHEV_6_129178015	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49472617					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129204960 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	234 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	1330 bp upstream
Tssr59119	transcription start site region 59119	1379 bp upstream
Tssr59120	transcription start site region 59120	1398 bp upstream
Tssr63549	transcription start site region 63549	1090 bp downstream
Tssr63550	transcription start site region 63550	1240 bp downstream