rs49474200 SNP Detail

Summary

• ID
  rs49474200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118407702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCGGT CCCGGCCAGG
  ACAAAGCATA GGTAGATCTT CTTAGCCATC CTTCAGTGAC AGGGATTAGG AGCACGAAGG
  GACCATTCCC ACTACGCCTT CTCTGAGGTG TTCATCGCTT TGATCTCCTA GGTGGAAGAA
  GATACCGACT CTCTGTGGTT CTTCTCCGTT CAAGGTCACA CACAAACCAT CTGCCTGGTG
  R
  GAAATCCAGA CCAGGTGTCT CCAGGTATCT CCGGAGGGCA CCTCGTGAGC ATGCCCTGTG
  CGACATGGTG CTAAATAGGT CGCTTATGAT TCAACTGCCA CCCACCCTCC TGACCTAGGT
  AGGTCTTCTC ATCTCTGTTT TATGGACACA AATTCAGGGG AGATTTGCAC TGGCTTCCTG
  GCGTTAGCCA GGGGTACCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60831456	NES16022153	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49474200					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60831456	NES16022153	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118407702 () rs orientation: forward

Symbol	Name	Function Class
Gm73266	predicted gene, 73266	within coordinates
Rr618848	regulatory region 618848	373 bp distal
Rr618849	regulatory region 618849	422 bp distal
Rr618850	regulatory region 618850	within coordinates