rs49474460 SNP Detail

Summary

• ID
  rs49474460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:76791752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTGATCA TACAAATATT
  TATGAATTAC ATTTTCAAAG TTTTTTGGTA TTTTTTAGGT ATCTTTTGAA AATTCAGGCA
  TTCTTTTATT ATAATTTTTA TTATTTTATG CTTATCAAAT AAATCATCTC TAAATAGAAT
  AATTATGTAT TCACATGCAT GATATTTATT GTTTAATTAT TAGCATATAA ATACAATTTT
  Y
  TTTAGAATAT AATAATACAT AGTACATAAC CTGATTTTCC ATAATACCTA TTAAGTAGCA
  CATTTTCCAC CAATGTTTGA AATTTTTATT ACATATATAC TGAATTTTTA GAAGTATTTT
  TATAAAATAT CATGTTTCAT TAATATGCTA TATCTATTTT TATATATTAG TAATGTACTT
  CTAATCACAT GTACACATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60755696	NES16392098	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs49474460					SNP	T	T	T	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60755696	NES16392098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:76791752 () rs orientation: forward

Symbol	Name	Function Class
Gm70762	predicted gene, 70762	within coordinates