rs49475636 SNP Detail

Summary

• ID
  rs49475636
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117660247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG AGAATGGCTT CACAAATAGT
  M
  TACAGAAAAA AAAAAGTGAC TTATC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135694692	ENSMUSSNP5633327	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
ss320900600	CHEV_3_117569516	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49475636					SNP	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117660247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13747	CpG island 13747	1902 bp proximal
Rr583873	regulatory region 583873	532 bp distal
Rr583874	regulatory region 583874	300 bp proximal
Snx7	sorting nexin 7	Intron