rs49475916 SNP Detail

Summary

• ID
  rs49475916
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136803259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTT TGAATGAAGC ATCCAAGAAA
  C
  TATTTCTTTA CCTTTCTTTT TTTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133848532	ENSMUSSNP4522121	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49475916					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136803259 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	1365 bp upstream
Cpgi18110	CpG island 18110	1308 bp proximal
Rr380176	regulatory region 380176	763 bp upstream
Rr640072	regulatory region 640072	1022 bp proximal
Rr640073	regulatory region 640073	1962 bp proximal
Tssr59337	transcription start site region 59337	1484 bp upstream
Tssr59338	transcription start site region 59338	1500 bp upstream
Tssr59339	transcription start site region 59339	1538 bp upstream
Tssr59340	transcription start site region 59340	1569 bp upstream
Tssr63834	transcription start site region 63834	228 bp upstream
Tssr63835	transcription start site region 63835	165 bp upstream
Tssr63836	transcription start site region 63836	1453 bp downstream
Tssr63837	transcription start site region 63837	1486 bp downstream
Tssr63838	transcription start site region 63838	1505 bp downstream
Tssr63839	transcription start site region 63839	1559 bp downstream
Tssr63840	transcription start site region 63840	1790 bp downstream
Tssr63841	transcription start site region 63841	1863 bp downstream
Tssr63842	transcription start site region 63842	1925 bp downstream
Wbp11	WW domain binding protein 11	within coordinates