rs49476528 SNP Detail

Summary

• ID
  rs49476528
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:52865924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGTTGT CTTTTTGCCC
  CACACCAGGG GCTAGCAGGT CCCGGTCTCA GCCCACATAG GTATTTTGCC TGGCTGCCTC
  TATCTACCTC TAGGGAAGCT CTCTAGGAAG AGGCCTGTTA ATAATTTACC CAGGATGCAC
  TGCAGACCGG CAGGTGGCTG TAAGCGGCAA CAAATGTCAG CCATGTGCCC TGAAGGCACA
  R
  CTGCCTGCCA GGCAGAACTC CCTACCAAAC AGCACGGACC TGGGGCCAGT CCACAGGAGT
  GTGCATGTGA GAGTTCTAAC TTCCTGGCTG ATGCTCATGG GGCATACTTT GCTCCCAAGG
  CTGTCCTCCA GCTCAGTAGG CCCGGGAATG TCTCTTAAGT CCTGTCATCC TGTCCTTTTC
  AGTTCTTTCC TTAGGCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61796098	NES17726123	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49476528					SNP	A	G	A	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61796098	NES17726123	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:52865924 () rs orientation: forward

Symbol	Name	Function Class
Rr479878	regulatory region 479878	within coordinates
Rr479879	regulatory region 479879	254 bp proximal