rs49477215 SNP Detail

Summary

• ID
  rs49477215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9467728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCC CATCCACATG GGTTTAGTCA
  R
  GGTTTTATAC CATCAGCGGA AAATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134574458	ENSMUSSNP2099802	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320650894	CHEV_3_9402668	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49477215					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9467728 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	352 bp upstream
Gm55345	predicted gene, 55345	183 bp downstream
Tssr28343	transcription start site region 28343	326 bp upstream
Tssr28344	transcription start site region 28344	381 bp upstream
Tssr28345	transcription start site region 28345	443 bp upstream