rs49477561 SNP Detail

Summary

• ID
  rs49477561
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141263291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATAGGCA TCTCGGAGTT
  CTTCTGTTTC TGAGGTCTAC AGGGCAGAGT CTGAACGCCA TTAAGTTTCC TTGTCATCTT
  AGTGCCTTTC CATCCCTTTC GTTTAAATGA TTCAAATTCT CTTTTTCCTT CCTGGCGGCG
  ATCACAACAA AACACATTCC ACTATATGGA GAAAGAGATC TATACTTAGC TCCACAACTG
  G
  ACCGGCAAGA ACATTTTTGT AGGCATAAAG ATAAGCAACA AACCAGAAAC AGTGAGTACC
  TGTTTGGGGG GGGGGGTGAG AACTGGGAAT TCCTGGGTCA AGGGTGAAGG GGAGATTACT
  TTCTGTTACC TTCTCATGCT CTGCTCCCAT TAAAGGTGTA CTAACCAAAT AAAATCCATT
  CGTCTCAAAG TGAGAACTGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387939	CHEV_4_141091895	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49477561					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141263291 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15233	CpG island 15233			185 bp proximal
Cpgi15234	CpG island 15234			1439 bp proximal
Gm4123	predicted gene 4123			within coordinates
Rr1207	regulatory region 1207			781 bp proximal
Rr603787	regulatory region 603787			565 bp distal
Rr603788	regulatory region 603788			804 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant