rs49477982 SNP Detail

Summary

• ID
  rs49477982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91115250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATCTAA AGGGCAATTT
  GTGAAAAGCA TTCCTTTTTT TTTTTTTTTT TTTTTCAGGA AAGTAGATCA ACTTTGCATG
  GGGTGATTCA AGGCTCATGT AATTAGGGAG AGGGAGGTAG ACACATTCTA CTTAGCACAC
  AGGTACTAAG AATCAAACTC AAGTCTTCAA CTTGGCCTGT TGGGCTTTAT TGCTGAGCCA
  Y
  GGAAAACAGG ACAGGATTTG CTTTGTCTTT ATTTTCCTTT AAGATTTGTT TTTTTTTTTT
  TTTTAAATAG ATTAGTTTAT TATTTTGTTC TGTTTTCTGG GCTTGTTTCC CCCTCCCCAA
  GGGTTAAAAT CTGTAGCCTT ACATTTTGTG GCCATAGAAA GTGTAGATAA GAACCTCAAA
  GAAATATCTC AAAGAAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52460373	NES15428527	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49477982					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52460373	NES15428527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91115250 () rs orientation: forward

Symbol	Name	Function Class
Cep128	centrosomal protein 128	within coordinates
Rr268939	regulatory region 268939	450 bp distal