rs49478866 SNP Detail

Summary

• ID
  rs49478866
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156958867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGAACT TGCTATATAG
  ACAAGGCTGG CCTTGAACTC ACAGAGATCC ACCTGTCTCT GCCTTCTGAG TGCTGGAATT
  AAAGGGGTGC ATCATCACGC CCTGTCACAA ACAACTTTTA TTAGTCTTTA AAATGCACAA
  CGGGAGGAGT CTCACTGAAG CGCTCTCAGA TTCTCTCTTA CTGACCCCCC CGCTCTACAC
  M
  ACCATTATAT ACCAGTTTAT TATTCCATAA ATACAATGAA TAACACTTTA TAAAATATAA
  TAATTCACAT TACCAAGGAG ATTATTACCA GATCATATCG GTAGAATGAC TATCATTCTA
  AAATTTAGGG TTTTTTTCCC CCCATCAACA GAACATTTGA AGTGATAAGC TGTTTGTTAG
  TGCTTCCACC TTGTGGTCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148092301	ENSMUSSNP6329029	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49478866					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156958867 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1987 bp distal
Rr568436	regulatory region 568436	7 bp proximal
Rr568437	regulatory region 568437	180 bp proximal
Rr568438	regulatory region 568438	581 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron