rs49479941 SNP Detail

Summary

• ID
  rs49479941
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:44289064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATCAATA GATGACTGAA
  TAAAGGAAAG CTACACAGAT GCACGTATAT GAAATGCATT ATATTCAGCT GTAAAGAAAA
  TGAGATTTGC AGAAAAATGG ACAGCTCTAA TCTTGGTTGT CAACTTCATA GGATCCCAAA
  TCATCTTTTT TTTTTTAAGA TTTATTTATT TATTATATGT AAGTCACTGT AGCTGTCTTC
  M
  GACACTCCAG AAGAGGGAGT CAGATCTCAT TAGGGATAGT TGTAAGCCAC CATGTGGTTG
  CTGGGATTTG AACTCAAGAG CAGGTAAGAG CAAGGTAAGA GCAGTCGGGT GCTCTTACCT
  GCTGAGCCAT CTAACCAGCT CCATCCCAAA TCATCTTATA GATAAGCCTC TGGGCAAACC
  TATGAGAGAT TACCTAGATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147795878	ENSMUSSNP731017	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49479941					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:44289064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7073	CpG island 7073	1659 bp proximal
Nudcd1	NudC domain containing 1	within coordinates
Rr302868	regulatory region 302868	1864 bp distal
Rr309746	regulatory region 309746	1869 bp distal
Rr311712	regulatory region 311712	536 bp proximal
Tssr131224	transcription start site region 131224	1732 bp upstream