rs49480390 SNP Detail

Summary

• ID
  rs49480390
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49011660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGTCTTGG AGACAGACAG GTGGATCCTT AGCACTCCCT
  GGGAAACCAG CCCAGAGTCT TCAGCAAGTC TCAGGTTGCA ACGAGTGACT TTGCCTTGAA
  C
  AAATCCAAGA TGGATGACTC CTGCAGAGAT GACATCTGAA GTTGACCTCT GGCCTACACT
  TATACACCAA TTTCCACACT AAATCCCTCT TATGCACCC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145722317	ENSMUSSNP2310936	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325410132	CHEV_17_48843957	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49480390					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49011660 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr13	DNA Segment, Chr 17, Derry C. Roopenian 13	1680 bp proximal
D17Mit178	DNA segment, Chr 17, Massachusetts Institute of Technology 178	1680 bp proximal