rs49480655 SNP Detail

Summary

• ID
  rs49480655
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38704334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCAGACA CCCAGCCCCC
  TGCTCCTACC CGCCCCAGGG CAGACTGGTA ACAGAGCCTG GACACACAGC TTGAGAGATC
  TCCTGACAAG AACATAGATT GAGATACACA GTCATGGTGG CCAGGGGCAA AGGTCTGTTT
  CACTCCCACC TAACCCTAAA AGGAATGTTG AAAAAACATC CTGGAACATT CTAGAATCCC
  K
  TATACTCTTA CCAGGTACTG ATCTTAGTAG GCTATTTAGC ATCCTTTTTT TCCTCCTCTG
  TATGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TACATGCATG TGTATATATA
  GGTGCCTGTG CATTTACGTG GAGGTCAGGC ACATACATTT CTGTCAATAG ACACCATGAC
  CAAGGTAACT CTTATAAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60719305	NES16354842	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49480655					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719305	NES16354842	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38704334 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	298 bp upstream
Rr366875	regulatory region 366875	98 bp downstream
Rr409725	regulatory region 409725	309 bp distal
Rr409726	regulatory region 409726	within coordinates
Rr409727	regulatory region 409727	290 bp proximal
Rr409728	regulatory region 409728	998 bp proximal
Tssr11346	transcription start site region 11346	320 bp upstream
Tssr11347	transcription start site region 11347	308 bp upstream
Tssr11348	transcription start site region 11348	253 bp upstream
Tssr11349	transcription start site region 11349	241 bp upstream
Tssr11350	transcription start site region 11350	219 bp upstream
Tssr11351	transcription start site region 11351	339 bp downstream