rs49480723 SNP Detail

Summary

• ID
  rs49480723
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8769550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGGAAC CTACACCTTC
  ATTTTAAATA ACTGATCCTA ATAATCAAAA CAAAGCGACA TTATTTTTTC AGAAATAATT
  TGGAGGTCGA TGAAATTCTT GGAGAGAATG TATATCTAAA ACATTTCTTA AGTATTACAA
  GCAAGCTGGG TGCAAACAGT ATGGAAGGAA TTTTATTGAC AGGTGCTCTT CAAGCCAAAT
  S
  TGTATTAATT GCTTATTTAA GTTAAGGGAA ACTTGCGTGC TAGTCAGGTG CAGTCTTACT
  GACAGACTAT TTTGATGGTC TTGTGTAAAG TCATTAGGGG TATTTGATTT AGGTTGAATT
  GGCTACAGAT GCAGAAATAA ATTCAGTCCT TAAGCATGGT TTGTATTGCT TGTAGAGGCA
  AGAATGTGTT ACTGTCATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61347491	NES16965320	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49480723					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61347491	NES16965320	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8769550 () rs orientation: forward

Symbol	Name	Function Class
Pum2	pumilio RNA-binding family member 2	within coordinates
Rr258442	regulatory region 258442	51 bp proximal