rs49481245 SNP Detail

Summary

• ID
  rs49481245
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:34078217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTGGGGC GGGGGGGGGC
  AGCTTCTAGG GAAATCTGTG AGTTTAACCG TAGCCACTTC ACTTCCCATA TCCTAGACAA
  TGAGGCAGAA GACCCCATCG CCACTTGTCT TAACTAGAAT TCCCCCTAGG AGCAGTTCTA
  CAGTTTCCTG GTGTGTCGGA TACAGAGGGT CAGGGTGCCT CCCTCATTAC TCAGGATAGG
  C
  AGAGATTCCT CAAGCCACAT TCCACATATT ACCTCCCTTA ATCACTAGTT CAAACAAAGC
  CTCAGTTTCT CCATCTATAA AATGGGATAG CTATGTCTTC CTGGCTGTGT CATTGATAGT
  CAGTGGGTCA AGTACACAGG TTCTTGCAAA TACCTGTTCC CTCCTGCTCA TCCAAGAAAT
  TCCTCTAGAC AGTAGGCCCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss139269611	ENSMUSSNP668657	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49481245					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:34078217 () rs orientation: forward

Symbol	Name	Function Class
D14Mit45	DNA segment, Chr 14, Massachusetts Institute of Technology 45	986 bp proximal
Fam25a	family with sequence similarity 25, member A	827 bp upstream
Tssr128061	transcription start site region 128061	859 bp upstream
Tssr128062	transcription start site region 128062	1995 bp downstream