rs49482119 SNP Detail

Summary

• ID
  rs49482119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18121728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAATAC ATAGTATTTG
  GATTTCACAT CACTTCACAC ATCATGTTTT ATTATTTTGT TCATGTTCAG GCAAAACTCA
  AAATAAAACA AAACCAGCCA ACCAAACAAG AAAACTATTC CTGGTTTGTA GGCTGTACAA
  CTGGTGTTGG TGGGACTGGG GAGAGAGTGT CAGTGGTTAA GATCACTTAA AGTGGTGGCA
  R
  GATGTGACCA TAGTTTAGGA GGCTCATTCA CTTTTCCTGT GAATTCAGAG TTATACTAGT
  TTCAAATATA ATTTTTTATT AGAGTAGAAT AGACAAGATA ACTGATATAG AGCACATACC
  ACAAATTCCA GTGTAGTAAA TCTAGGTCTT TTTTTTTTTT TTAGATTTAA GAAAAAAATA
  ATGAGAATAT GAAAACATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60545641	NES16557365	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49482119					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60545641	NES16557365	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18121728 () rs orientation: forward

Symbol	Name	Function Class
Rr329600	regulatory region 329600	1728 bp distal
Rr336961	regulatory region 336961	1808 bp distal
Rr343850	regulatory region 343850	759 bp distal
Rr343851	regulatory region 343851	206 bp distal
Tssr142835	transcription start site region 142835	1834 bp downstream