rs49482180 SNP Detail

Summary

• ID
  rs49482180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165468719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAAGAGGG ACACAGAGGT
  GGCCAACACT GGTGTCCAGA GCACGGCCAA ATTCACACCA AGTGCTGGAT AGGAAGTGGA
  TCAGAGGGAA AGGGCTGCCT GGTGTGTTTG AATGTATTCG TTCAAATGAC ACATGCTGAC
  CCTGTAGCAT AATGACAGGA GAGAACGCTG GAGGTGTGGC ATTGTAGAGG CAGTGCGGGG
  Y
  GGGGGGCAGG GAAGAGGATG GGAGCCCAGT CCAGGCGGGA GAGGACCAGG CTTGGCTGAG
  TGGGAGCACC TTGCCGCTCA TGGTTATGCT CAAAGCCCAT CCTCTACCAG GCAAATTGAG
  CTCCAGACAC CAATTCCCAG GGCTGGTTAG ATATTCTAGA ATGCAGCCCG TAGGCAGGCA
  GCCATTTGGT CCCATCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148241884	ENSMUSSNP6403063	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49482180					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165468719 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	86 bp proximal
Rr569966	regulatory region 569966	1149 bp proximal
Rr569967	regulatory region 569967	1263 bp proximal