rs49482379 SNP Detail

Summary

• ID
  rs49482379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAATTTGAG AAACCTCTTT TCGTTCAGGT AATAACGTGA
  AGGTGACAGG CTGAGGGGAA AGGTCTCGCA AAGCCGGCAT GTCCACATTC TTGGCCTCTC
  Y
  CTAACATTCT TTCTTCTGGA GGTTTTTGAG GTAGAGTGTC CTGGAATGAG GGGCTTCAAA
  GGAGGAGGGG GAAGGGAGAA AAGATCGAGC TTTCCATGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133020672	ENSMUSSNP5139186	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321756050	CHEV_6_17642848	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49482379					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	827 bp proximal
Gm55211	predicted gene, 55211	578 bp upstream
Gm55212	predicted gene, 55212	1089 bp upstream
Rr626833	regulatory region 626833	within coordinates
Rr626834	regulatory region 626834	729 bp proximal
Rr626835	regulatory region 626835	1696 bp proximal
Rr626836	regulatory region 626836	1867 bp proximal
St7	suppression of tumorigenicity 7	732 bp upstream
Tssr55085	transcription start site region 55085	759 bp upstream
Tssr55086	transcription start site region 55086	1057 bp upstream
Tssr55087	transcription start site region 55087	1117 bp upstream
Tssr55088	transcription start site region 55088	1157 bp upstream
Tssr55089	transcription start site region 55089	1203 bp upstream
Tssr55090	transcription start site region 55090	1322 bp upstream
Tssr59909	transcription start site region 59909	1847 bp downstream