rs49483517 SNP Detail

Summary

• ID
  rs49483517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96241495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCA GTGGTGGTCA TTATCCCCAG
  Y
  CCCCTCTCCC CCACCATCTT TAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132677026	ENSMUSSNP275470	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49483517					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96241495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	1343 bp proximal
Cpgi3657	CpG island 3657	1999 bp proximal
Hoxb2	homeobox B2	963 bp upstream
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	221 bp distal
Rr454	regulatory region 454	449 bp distal
Rr455383	regulatory region 455383	594 bp distal
Rr455384	regulatory region 455384	201 bp distal
Rr455385	regulatory region 455385	472 bp proximal
Tssr104519	transcription start site region 104519	927 bp upstream
Tssr104520	transcription start site region 104520	1200 bp upstream
Tssr104521	transcription start site region 104521	1229 bp upstream
Tssr104522	transcription start site region 104522	1281 bp upstream
Tssr104523	transcription start site region 104523	1305 bp upstream
Tssr104524	transcription start site region 104524	1385 bp upstream
Tssr104525	transcription start site region 104525	1451 bp upstream
Tssr110331	transcription start site region 110331	542 bp upstream
Tssr110332	transcription start site region 110332	470 bp upstream