rs49483760 SNP Detail

Summary

• ID
  rs49483760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76545435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAAAGCA AAGAGTGTGC
  ATCTCAGCGT TCCCTTTAAG ACAGTTGAGT TGACCAGTTG GGTCACATTT CCTATTCCTG
  TTTTGTCAGT GGGAAGGGCG GGAAGGCCTG TTGAAATGTG TCTCCATGCC ATGTGTGTCC
  AGCCACGTGT GTGGCCCTCT AGCCCAGTGC CACCTTCCTG GAGACTGTCT GGTAGAGTAC
  R
  CCACGTAGCA GGGCCTGGTA GTTTGGTACA CGGAATAGGT GGCGCTCGCC AAAGGCCACG
  TCGTACTCTG CAGTCTTGCC AGTGACAAGC ACACGGATGT GGGGCTCGTT CACCTGGGGT
  CCCACCACCA CCACAAAGAT CTCAATGCCT GCACGCTGGG CCTCCTGCAC AGCCTTCTCA
  ATGGCCTCTG CTGTGGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61288980	NES16903934	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49483760					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288980	NES16903934	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76545435 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Tssr98195	transcription start site region 98195	482 bp upstream
Tssr98196	transcription start site region 98196	245 bp upstream
Tssr98197	transcription start site region 98197	90 bp upstream
Tssr98198	transcription start site region 98198	20 bp upstream
Tssr98199	transcription start site region 98199	41 bp downstream
Tssr98200	transcription start site region 98200	82 bp downstream