rs49484220 SNP Detail

Summary

• ID
  rs49484220
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170786488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAA GAGCTTCGGG AGGTCTCCCT
  G
  GTGTCAGACA ACCTTATTTG TTCTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146148889	ENSMUSSNP4273453	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320114978	CHEV_1_172889050	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49484220					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170786488 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Gm70986	predicted gene, 70986	603 bp upstream
Rr20517	regulatory region 20517	within coordinates
Rr20518	regulatory region 20518	513 bp proximal
Rr20519	regulatory region 20519	912 bp proximal
Tssr284	transcription start site region 284	975 bp downstream
Tssr14949	transcription start site region 14949	2 bp upstream
Tssr14950	transcription start site region 14950	820 bp downstream
Tssr14951	transcription start site region 14951	898 bp downstream
Tssr14952	transcription start site region 14952	1155 bp downstream
Tssr14953	transcription start site region 14953	1170 bp downstream
Tssr14954	transcription start site region 14954	1937 bp downstream