rs49484346 SNP Detail

Summary

• ID
  rs49484346
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35957857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCATCT CCACCCCATG
  ACTTACTTCT CTCAAGGTTC GGTTACTCCC TCTACTGTTT TAAACATTGG ATTTTGAAGT
  GCTGTTGTGC TCTGTGTATA TCCTTAAGCT TGCTACCTGC TTCTCAGGAC ACCAGTGCCA
  AGCCATCTGT TTTGCTAGAA TTGGGCTCCT AGGTCACGTG TGTGTAGCCG GTAGCCTGTA
  K
  GTGGAGAAAA GGTGCAGCAC CTTTCAGTTC TGAGATCACA GAAGAAAGGC CCTCTGCAGC
  CACCCTGCTT CCCAGCCGCC CTCCAGCTCT GCCCAGCAGA GGGTGCTGGG ACGCAGAGAA
  AGAGTGGGAT GGCCAGACAG GACCGAACAC AAGAACTAAC CTCGCCCACC CTTGTGAGGC
  AGCTGTTAAT CACCCCCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61762174	NES17696573	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49484346					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61762174	NES17696573	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35957857 () rs orientation: forward

Symbol	Name	Function Class
Cdyl	chromodomain protein, Y chromosome-like	within coordinates
Gm48708	predicted gene, 48708	within coordinates
Rr477255	regulatory region 477255	1530 bp distal
Rr477256	regulatory region 477256	1797 bp distal
Rr477257	regulatory region 477257	1274 bp distal
Rr477258	regulatory region 477258	138 bp distal
Rr477259	regulatory region 477259	within coordinates
Rr477260	regulatory region 477260	within coordinates
Rr477261	regulatory region 477261	89 bp proximal