rs49484475 SNP Detail

Summary

• ID
  rs49484475
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117841225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTGCAG CTTCCGGCTC
  CGTGTGGCAC CTGGGTCCTG GACCGGAAGG CTGCAAATCA GTGGTCAGGA GCTCTTCGGG
  CTGGTCCATG TATCCTGTCA GTCACAAGGC CTGGAGACCT ATTCTTAGAC TCTCAGTTCT
  TATAGACCTT ATTAAAATGG TAATATCCTT GCTGGCATCA ATCACTGACA AATTATGCAC
  R
  GGAAACTTGG GCTCCGGTTT GCAGAACAAG CTTTTCTGGA GGGGATGGTT CACAGGGAAG
  TGCTGGGAAG TGGTAGCCAT TCCTCAGGGA GTGAAAGGAA TATGTAGAGT TTGAGGGGTG
  AGCAGGGCAG CCATTCCAAA AGGCTCCAGG AGAGGAAGCT GATGGGACCA CGCTTTGTCT
  CTGTTGCCTG CTCCTCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52224727	NES15323646	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49484475					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52224727	NES15323646	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117841225 () rs orientation: forward

Symbol	Name	Function Class
Gm37852	predicted gene, 37852	33 bp downstream
Rr226004	regulatory region 226004	within coordinates
Rr385361	regulatory region 385361	91 bp upstream