rs49484645 SNP Detail

Summary

• ID
  rs49484645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123269254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCTTTAC TGTTGCCCAG
  AGCAGCAGTT GAATTCATTT ATTTACTTAC TTTTTTTTTT TTTTTTTTTC AATTTGAGAC
  AGGGCCTCAC TGTGTAGTCA TGATTGTCCT GGAACTTGCT ATGTAGACCA GGCTGGCACT
  AAACTCACAG AGATCAGCCT GTCTCCGCTT TCCAGGTTTG GGGATTAAAG GTCTATGCTA
  Y
  AATGCCAAGC AGCAGTTGGA TTTCTTTAAG AAACTATTTT TTTTCATAAA GAAAAAGGAA
  AGGTAGTTGG AAATTTATTT GCTCATTTAG TTGGTTAATT TGGGAGACTT GTTCTGCCTT
  TTTTTTTTTT GAGAGTGCTA GCACAGTTGT AACTGCAAAG AGGCCTATGC TAAGAGCTAC
  ACTGCTTGGC TAGGCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137077285	ENSMUSSNP3825800	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49484645					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123269254 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	within coordinates
Rr193658	regulatory region 193658	347 bp proximal
Rr203065	regulatory region 203065	638 bp proximal
Rr208064	regulatory region 208064	within coordinates