rs49485451 SNP Detail

Summary

• ID
  rs49485451
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43354305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTTTTTCCAT CGGCAAATTA AAGGATTAAA AAAATTTTTT
  TTTCCGTTCT CATTGTTTAC CAAAACCAGG CACGCAGCTT AAAAGTTGAC TTGGGCTTTT
  M
  TTTTCCCTCC ACCCCCACCC CAAGTCCCCG AAAGTTGGAG AACTGCGAGG GGTTGGTTTC
  TTATTTCTCA ACTCCGACTC TGCAGTCCGG GAAACTAGGA G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147087998	ENSMUSSNP964382	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49485451					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43354305 () rs orientation: forward

Symbol	Name	Function Class
Bend3	BEN domain containing 3	825 bp upstream
Cpgi1500	CpG island 1500	46 bp proximal
Rr224738	regulatory region 224738	within coordinates
Rr384594	regulatory region 384594	within coordinates
Tssr93131	transcription start site region 93131	313 bp upstream
Tssr93132	transcription start site region 93132	503 bp upstream
Tssr93133	transcription start site region 93133	832 bp upstream
Tssr93134	transcription start site region 93134	892 bp upstream
Tssr93135	transcription start site region 93135	973 bp upstream
Tssr93136	transcription start site region 93136	1035 bp upstream