rs49487579 SNP Detail

Summary

• ID
  rs49487579
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46653998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGATTGCT GTGAGTTTAG
  GGACTTAGAG TTTTACGCCA GCCTGGCCTG TATCCTTGTC TCAAAAGCCC AGTATATGTG
  TTCATTCAAA GCACATGTGT CAGCACAAAT AATAAGCAGG TCTCCATTTA CTCCAGACAA
  AAGAGAGTCA AGAGGTGCCT GCTAGGCATG GCTCCACAGT TGTGGGCTTT TGACAACACC
  C
  AGAGCTGAGT TAAATGTGAT TTTTAACATC GACAGTTGTG GTAGTTTGTA TGTAACTGGC
  TCCATTAGGC CCATAAGGGA GTGGCATGAT TAGGAGGTGT GGCTTTCTTA GAGTGGGTGT
  GGCCTTGCTG ATGGAGTCAC TGTGGAGGTT GGCTTTCAGG TGTTATATGC TCAGGCTATA
  TCCAGTGTGG TATGCAGTCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148973511	ENSMUSSNP4106298	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324333678	CHEV_13_46595891	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49487579					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46653998 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	1381 bp upstream
Cpgi5539	CpG island 5539	1261 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Rr478915	regulatory region 478915	1155 bp proximal
Rr478916	regulatory region 478916	1337 bp proximal
Rr478917	regulatory region 478917	1438 bp proximal
Rr478918	regulatory region 478918	1883 bp proximal
Tssr119597	transcription start site region 119597	1337 bp upstream
Tssr119598	transcription start site region 119598	1376 bp upstream
Tssr119599	transcription start site region 119599	1515 bp upstream
Tssr119600	transcription start site region 119600	1527 bp upstream
Tssr119601	transcription start site region 119601	1591 bp upstream
Tssr119602	transcription start site region 119602	1619 bp upstream