rs49487710 SNP Detail

Summary

• ID
  rs49487710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45160121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTTTCCT TATCTTTGAA
  AATCTTTCCG GTTTTCTTGG ACGCTCACAG TCTTCAACGC AACATTTCCT GCGTCCGTTT
  TCAAGTAAAA CTCAAAGCCC TGCATGCCCA GGGATTGGGG GAGGGGGTGA GACAGGACAA
  CTTTTGCGGA CATCTTGCCG CGGTGTCTCT TGGGAGTTGT AGTTTTCTCG TTTAATTTCG
  Y
  TCCACAAGTT CCTGCAAGTG TTAGGAAACT ACATAGCATA TGATCATTAT TTTTTAAACA
  GAGTCTCACT GCATATCCCT AGATGGAGCT CTGTGTAAAC CAGGATGGCC TAGAGGTCAC
  AGAGATCCTT GTGCTGAGAA TAAAAGTAGG TAATACACAC AAATGAAAGT GAAGAAGCTG
  CGAATACCTG ATTCTGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61003334	NES16128290	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49487710					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003334	NES16128290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45160121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19064	CpG island 19064	128 bp distal
D7Mit81	DNA segment, Chr 7, Massachusetts Institute of Technology 81	1845 bp proximal
Gm45478	predicted gene 45478	1660 bp downstream
Nucb1	nucleobindin 1	308 bp upstream
Rr400313	regulatory region 400313	115 bp downstream
Rr646472	regulatory region 646472	382 bp distal
Rr646473	regulatory region 646473	within coordinates
Rr646474	regulatory region 646474	342 bp proximal
Tssr72423	transcription start site region 72423	337 bp upstream
Tssr72424	transcription start site region 72424	298 bp upstream
Tssr72425	transcription start site region 72425	284 bp upstream
Tulp2	TUB like protein 2	within coordinates