rs49487818 SNP Detail

Summary

• ID
  rs49487818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42453768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTT GTTTCCAGCT TATGGGCATT
  Y
  CGGGAGCTTG TTGAAAAAAG CCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52629869	NES15518711	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49487818					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52629869	NES15518711	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42453768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	1258 bp proximal
D13Mit138	DNA segment, Chr 13, Massachusetts Institute of Technology 138	513 bp proximal
Edn1	endothelin 1	1184 bp upstream
Gm60910	predicted gene, 60910	within coordinates
Rr388326	regulatory region 388326	within coordinates
Rr478143	regulatory region 478143	1203 bp distal
Rr478144	regulatory region 478144	80 bp proximal
Rr478145	regulatory region 478145	456 bp proximal
Rr478146	regulatory region 478146	1051 bp proximal
Tssr119437	transcription start site region 119437	973 bp upstream
Tssr119438	transcription start site region 119438	1132 bp upstream
Tssr119439	transcription start site region 119439	1154 bp upstream
Tssr119440	transcription start site region 119440	1217 bp upstream
Tssr119441	transcription start site region 119441	1320 bp upstream
Tssr119442	transcription start site region 119442	1490 bp upstream
Tssr119443	transcription start site region 119443	1531 bp upstream
Tssr119444	transcription start site region 119444	1661 bp upstream