rs49488137 SNP Detail

Summary

• ID
  rs49488137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54601964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTATA GGAAATCTGG
  TTTTCTGTCA CTAGAATTTG TACTTTAACA GAGTTGTGTA GTTTCTGTGG CAGTAAGTGC
  AAATTGATAG GTGAAAAATT GTAAAACAAC TTAGTGTCTT CAGAGCAGAG GGTATCATCT
  TTGGTAGGCA GGAAGGGTTA GAACAGTGGG CTTCCACGGT GGTGTTTCCT TATTTCTGGG
  Y
  CCCCCACTCT ACTCTAGACT TTGACCAGAA TCCAGATACT GGGACATGGG CATCCATCCT
  AAAGCTGGGT AGGTCACTTG GTTTGTAAGG CAGGATGAGA CCCCCTGCAT TATGGGAAAG
  ATTTTTCAAA GATGTTTCTC CTTTTTTTAA GTAAAAGTAT TAGAGAAGTC TGGAAATGTA
  GCCTGGGGCA CTTGGGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135184764	ENSMUSSNP1408625	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49488137					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54601964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	1356 bp distal
Gm65558	predicted gene, 65558	1882 bp upstream
Rr397672	regulatory region 397672	1681 bp downstream
Rr576829	regulatory region 576829	1921 bp distal
Rr576830	regulatory region 576830	1428 bp distal
Rr576831	regulatory region 576831	968 bp distal
Rr576832	regulatory region 576832	397 bp distal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29131	transcription start site region 29131	1743 bp downstream
Tssr29132	transcription start site region 29132	1707 bp downstream
Tssr29133	transcription start site region 29133	1675 bp downstream
Tssr29134	transcription start site region 29134	1651 bp downstream
Tssr29135	transcription start site region 29135	1488 bp downstream
Tssr29136	transcription start site region 29136	1464 bp downstream
Tssr29137	transcription start site region 29137	1442 bp downstream