rs49488450 SNP Detail

Summary

• ID
  rs49488450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149210021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACATTAG TAGCTGACCA
  ATGAGTTTTA AAATATACTG CTGCTTTGCT GACCCATCAT AATATGGCTG TCCAACCCTC
  CACAAAATGT ATAAAGGAAC TATGCTTTCT GAGCTCTGGG GTTGACCCTC CCTGCGACGT
  GTCAGAACAA TAAACCTCTT GCCATTGCAG CGATCTGTTG TCAAGTTGTG TTTTTGGGCT
  Y
  GCGCACCCAG GGTAAAGCCT CGGAGGTCTT ACACCTCCAT TCCTTACCTA GGACCAATCA
  GCTTAAAAGT TAGCTGATAA TACTTTGCCT AGTAAGCCTA CTGCTTCCCT TCTTGCCCAT
  TAAATGTTTT GTTATTTTCC CTATAAAAAG CCTACCCTGA GAGCAGACTA GGAATATAAT
  TATGTTTCTG AGTTCTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss60961298	NES16169812	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs49488450					SNP	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961298	NES16169812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149210021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	778 bp proximal
Gm56997	predicted gene, 56997	322 bp downstream
Resf1	retroelement silencing factor 1	891 bp upstream
Rr380294	regulatory region 380294	within coordinates
Rr641718	regulatory region 641718	280 bp distal
Rr641719	regulatory region 641719	415 bp proximal
Rr641720	regulatory region 641720	798 bp proximal
Rr641721	regulatory region 641721	847 bp proximal
Rr641722	regulatory region 641722	962 bp proximal
Rr641723	regulatory region 641723	1142 bp proximal
Tssr59650	transcription start site region 59650	790 bp upstream
Tssr59651	transcription start site region 59651	868 bp upstream
Tssr59652	transcription start site region 59652	921 bp upstream
Tssr59653	transcription start site region 59653	1022 bp upstream
Tssr59654	transcription start site region 59654	1210 bp upstream
Tssr59655	transcription start site region 59655	1259 bp upstream
Tssr59656	transcription start site region 59656	1805 bp upstream
Tssr64178	transcription start site region 64178	726 bp upstream
Tssr64179	transcription start site region 64179	1110 bp downstream
Tssr64180	transcription start site region 64180	1133 bp downstream