rs49488643 SNP Detail

Summary

• ID
  rs49488643
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128783959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCCATCA AGCAATCTTT
  CATTTCATTT TCTGTCCACA ATCTGTGAGC ATTTTCCAAA TGCTCAAGGG AAAAATAGAT
  TAGGTTGTGG GCTCCTCATA GCTGTCTCAT GTTTGAATTC CTAAGACAAC CACAGTCTTC
  AGACAGTTTT GCTTTCTGAG GCTATAAAAT GTCTTAGATA ATGTGCAAAC TCAGCTGTCA
  K
  GCTTTGTGCT CTAGAGAAAT TAATAGATGT GTTGTCATGA AAGATGCCCA GGTCTGGGTC
  TTTTGTGATG TCTTAGTGAG GGTTACCGTT GCTGTGATGA AGCACCATGA GCAAAAGCAA
  CTTGGGAAGG GAAGGGTTTA TTTGGCTTAT GCTTTGACAT CACTGTTTAC CACTGAAGGA
  AGTCAGGACA GGAACCTGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss60795383	NES16468496	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs49488643					SNP	G	G	G	G	G	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60795383	NES16468496	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128783959 () rs orientation: forward

Symbol	Name	Function Class
Rr372000	regulatory region 372000	685 bp downstream
Rr417836	regulatory region 417836	827 bp proximal