rs49488785 SNP Detail

Summary

• ID
  rs49488785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70417561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCATCATTG CAGGCTGGGA CCCTCAAGAA GGAGGGCAGG
  TCAGGCCCTC CTCACCAGAG TACTGGAGTC ACACCTCTGA TGCTCCACCC CTTCGGCCAT
  Y
  TTGTTTGTCT GTCTGTCTGT CCGTCCTGTA TGCATGTATC CTTATGGGTA CATGTGTGTG
  GAGGCCAGAG GTGTGCCAGG GTTGTCTTCC TCATGAGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132372340	ENSMUSSNP4201377	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49488785					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70417561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	1193 bp distal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Rr369269	regulatory region 369269	1351 bp downstream
Rr450322	regulatory region 450322	1339 bp distal
Tssr102728	transcription start site region 102728	1341 bp downstream
Tssr102729	transcription start site region 102729	804 bp downstream
Tssr102730	transcription start site region 102730	760 bp downstream
Tssr102731	transcription start site region 102731	701 bp downstream