rs49491562 SNP Detail

Summary

• ID
  rs49491562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20189311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GAACAGAAAT CCGCCTGCCT CTGCCTCCCA AGTGTTGGGA
  TTAAAGGCGT GCGCCACCAC CGCCCCGGCT ACCTTTTTTG GTAAGAGTTA GCACACTTTA
  R
  AAATTGAGGA TATTGGCAGC GGTGATTGGG GGGATAAATG GGTGAAGGAA GAAGGTTATA
  GTTCTGTCAC TCAGTGCTGG CCTTGAACTC CCAGTTAATC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146937457	ENSMUSSNP1771085	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49491562					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20189311 () rs orientation: forward

Symbol	Name	Function Class
4933406P04Rik	RIKEN cDNA 4933406P04 gene	716 bp upstream
Bclaf1	BCL2-associated transcription factor 1	within coordinates
Cpgi1349	CpG island 1349	238 bp distal
D10Csu2	DNA segment, Chr 10, Central Connecticut State University 2	1395 bp distal
Gm67769	predicted gene, 67769	within coordinates
Rr428530	regulatory region 428530	1018 bp distal
Rr428531	regulatory region 428531	1533 bp distal
Rr428532	regulatory region 428532	727 bp distal
Rr428533	regulatory region 428533	226 bp distal
Rr428534	regulatory region 428534	1406 bp proximal
Rr428535	regulatory region 428535	1595 bp proximal
Tssr92593	transcription start site region 92593	1165 bp downstream
Tssr92594	transcription start site region 92594	1073 bp downstream
Tssr92595	transcription start site region 92595	1047 bp downstream
Tssr92596	transcription start site region 92596	1026 bp downstream
Tssr92597	transcription start site region 92597	589 bp downstream
Tssr96944	transcription start site region 96944	1287 bp upstream