rs49491748 SNP Detail

Summary

• ID
  rs49491748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:61910727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCCCCC ACGCCTTCAT
  CCTTGCTAAT TCTTTTTGGA TAGCTTGTTG CTTTAACTAG ATTGGCCCTT TCTTGGCTAG
  TATTTTCTGC TGTACCTATG AGTGGTGTGG GAGAACTGTG CAGACTTCCA GGAAGCGCAG
  CCATGAAGCT ACATGTGCCT ATGTGTAGAC ACATCATGGA TTTTCTTACT AGTTTACTAG
  Y
  GGGTGATAAT CTGTCCTTTT GAGCTCTCCA GAACGTTCTA GAAGCTTAAG GAGAGAAATC
  ACTTAAGAGA GTATAGGGAG AAGTGAGGTT TTTGTTTCCT TTCTGCTCTT GTGTTTTTAA
  GGGGTTGTTG TCATTTGACC TAGAGAAAGC CAAATGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52563388	NES15634477	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49491748					SNP	T	T	T	T	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52563388	NES15634477	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:61910727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7132	CpG island 7132	1605 bp distal
Cpgi7133	CpG island 7133	593 bp distal
Gm54427	predicted gene, 54427	677 bp downstream
Pvt1	Pvt1 oncogene	within coordinates
Rr390819	regulatory region 390819	within coordinates
Rr503088	regulatory region 503088	748 bp distal
Rr503089	regulatory region 503089	within coordinates
Rr503090	regulatory region 503090	520 bp proximal
Tssr131427	transcription start site region 131427	820 bp downstream
Tssr131428	transcription start site region 131428	338 bp upstream
Tssr131429	transcription start site region 131429	406 bp upstream
Tssr134486	transcription start site region 134486	260 bp downstream
Tssr134487	transcription start site region 134487	281 bp downstream