GGGCCTCCCG GTCTCCTTCG GGGGAAGAGG AGGCAGGATT TGGCTCTCCA CTCCCCATCT CGATGCACCC CTGCAATCCT TAGCCCATTT TATCCCAGAG Y CTTACTGGAT GCCCGCACCT GCTGTGCGAT CTGCGGACAC CCTGCAAGTG CAGACGCTTG AGGCCCTCTA GCCAGCGACT CCGAGGCCCA ACCTATCAG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
DBA/2J |
---|---|---|---|---|---|---|---|
ss132417974 | ENSMUSSNP2006929 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | T |
SNP Consensus Information | |||||||
SNP | Consensus Type | A/J |
DBA/2J |
||||
rs49492537 | SNP | C | T |
Location: Chr11:72852503 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Atp2a3 | ATPase, Ca++ transporting, ubiquitous | within coordinates | ||||||
Cpgi3227 | CpG island 3227 | within coordinates | ||||||
Rr450779 | regulatory region 450779 | 1223 bp distal | ||||||
Rr450780 | regulatory region 450780 | 498 bp distal | ||||||
Rr450781 | regulatory region 450781 | within coordinates | ||||||
Rr450782 | regulatory region 450782 | 978 bp proximal | ||||||
Tssr102861 | transcription start site region 102861 | 1382 bp downstream | ||||||
Tssr102862 | transcription start site region 102862 | 498 bp downstream | ||||||
Tssr102863 | transcription start site region 102863 | 449 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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