rs49492598 SNP Detail

Summary

• ID
  rs49492598
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88862973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAACAAAC AACAACAACA
  ACAACAAAGA TTTAGAAAGG CAGCTTGAAT TTGATGATCA CATTTTGATG CTATGTCATT
  TAGCAGCTTT TTAATGCTTG AGATGAGGTT GAAGAACCAA GAAAGGTGTG AGTCTTTTCC
  TTAAAATACA CAAGGCCCCA AAGCAGCCTT CCCTGATTTT TGCAAAGATT GACTTCAGTT
  A
  TAAAGAGAAG TCAGAAAAAT ATTAATTGAA TCCTTGGCTT TTGAAAACGC TAGTTCAGAA
  TGCAAAAGGA TGATTAGGCA CCATCAGCAC CAATAGAATA GATTAGAGAT ATTGGATCTC
  ACATTTATGA TGCTAATCTG ATAGTAAATT CTAAAAGTCT TAAGAAAAAA AATCAAACTG
  TCAGATGTCT TAACTGTGGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss132548856	ENSMUSSNP5742238	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49492598					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88862973 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	510 bp upstream
Coil	coilin	1788 bp upstream
Cpgi3523	CpG island 3523	1599 bp proximal
Gm10367	predicted gene 10367	229 bp downstream
Rr402857	regulatory region 402857	1799 bp downstream
Tssr104058	transcription start site region 104058	1884 bp downstream
Tssr104059	transcription start site region 104059	1772 bp upstream
Tssr104060	transcription start site region 104060	1781 bp upstream